James, R.R., Lawrence, C.J., Papiernik, S.K., Van Tassell, C.P., Ahuja, L.R., Baxter, I.R., Cannon, S.B., Lunney, J.K., Rexroad Iii, C.E., Sadler, J., Stanton, T.B., Stephensen, C.B. 2013. Big data computing: Building a vision for ARS information management. USDA. Agricultural Research Service Publication (White Paper).
Wiens, G.D., Lapatra, S.E., Welch, T.J., Evenhuis, J., Rexroad III, C.E., Leeds, T.D. 2013. On-farm performance of rainbow trout (Oncorhynchus mykiss) selectively bred for resistance to bacterial cold water disease: effect of rearing environment on survival phenotype. Aquaculture. 388-391:128-136.
Wang, J., Ma, H., Rexroad III, C.E., Yao, J. 2013. Identification and characterization of long non-coding RNAs in rainbow trout eggs. Annual International Plant & Animal Genome Conference. P0509.
Picklo, M.J., Raatz, S.K., Cleveland, B.M., Rexroad Iii, C.E. 2013. Evaluation of long-chain n3 fatty acid content in diploid and triploid rainbow trout. Federation of American Societies for Experimental Biology Conference. 27:1079.15.
Palti, Y., Gao, G., Miller, M., Vallejo, R.L., Wheeler, P.A., Quillet, E., Yao, J., Thorgaard, G.H., Salem, M., Rexroad III, C.E. 2013. Single nucleotide polymorphism (SNP) discovery in rainbow trout using restriction site associated DNA (RAD) sequencing of doubled haploids and assessment of polymorphism in a population survey. Annual International Plant & Animal Genome Conference. P0507.
Wiens, G.D., Leeds, T.D., Lapatra, S.E., Wilson, C., Cavendar, W., Rexroad III, C.E. 2012. Field evaluation of rainbow trout selectively bred for resistance to bacterial cold water disease. Flavobacterium Meeting. CD-ROM.
Burki, R., Krasnov, A., Bettage, K., Rexroad III, C.E., Afanasyev, S., Antikainen, M., Burkhardt-Holm, P., Wahli, T., Segner, H. 2012. Pathogenic infection confounds induction of the estrogenic biomarker vitellogenin in rainbow trout. Journal of Society of Environmental Toxicology and Chemistry. 31(10):2318-2323.
Lin, C., Wang, L., Hao, M., Hostuttler, M.A., Rexroad III, C.E., Yao, J. 2012. Molecular characterization and expression analysis of Zar1 and Zar1-like genes in rainbow trout. Society for the Study of Reproduction Annual Meeting. 564.
Wiens, G.D., Leeds, T.D., La Patra, S.E., Wilson, C., Cavendar, W., Rexroad III, C.E. 2012. Field evaluation of rainbow trout selectively bred for resistance to bacterial cold water disease. Flavobacterium Meeting. 126.
Salem, M., Vallejo, R.L., Leeds, T.D., Palti, Y., Liu, S., Sabbagh, A., Rexroad III, C.E., Yao, J. 2012. RNA-Seq identifies SNP markers for growth traits in rainbow trout. PLoS One. 7(5):e36264.
Rexroad III, C.E., Salem, M., Miller, M., Yao, J., Gao, G., Liu, S., Thorgaard, G., Palti, Y. 2012. Use of RADs and doubled haploids to identify SNPs in rainbow trout [abstract]. p. 246.
Palti, Y., Vallejo, R.L., Welch, T.J., Leeds, T.D., Evenhuis, J., Gao, G., Liu, S., Rexroad III, C.E., Wiens, G.D. 2012. Mapping of QTL for bacterial cold water disease resistance in rainbow trout [abstract]. International Symposium on Genetics in Aquaculture. p. 354.
Burki, R., Krasnov, A., Bettage, K., Rexroad III, C.E., Afanasyev, S., Antikainen, M., Burkhardt-Holm, P., Wahli, T., Segner, H. 2012. Molecular crosstalk between a chemical and a biological stressor and consequences on disease manifestation in rainbow trout. Aquatic Toxicology. 127:2-8.
Liu, S., Gao, G., Castano-Sanchez, C., Palti, Y., Rexroad III, C.E. 2012. Analysis of differential gene expression in response to handling and confinement stress in rainbow trout using whole transcriptome RNA-seq [abstract]. International Symposium on Genetics in Aquaculture. p. 367.
Gahr, S.A., Weber, G.M., Rexroad Iii, C.E. 2012. Identification and expression of Smads associated with TGF-beta/activin/nodal signaling pathways in the rainbow trout (Oncorhynuchus mykiss). Fish Physiology and Biochemistry Journal. DOI: 10.1007/s10695-012-9611-7.
Salem, M., Rexroad III, C.E., Thorgaard, G., Yao, J. 2012. New in-depth rainbow trout transcriptome reference and digital atlas of gene expression. Annual International Plant & Animal Genome Conference. W045.
Sanchez, C., Weber, G.M., Gao, G., Cleveland, B.M., Yao, J., Rexroad III, C.E. 2011. Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors. Biomed Central (BMC) Genomics. 12:626.
Palti, Y., Vallejo, R.L., Welch, T.J., Evenhuis, J., Leeds, T.D., Liu, S., Rexroad III, C.E., Wiens, G.D. 2011. Detection of quantitative trait loci (QTL) for resistance to bacterial cold water disease and spleen size in rainbow trout. Aquaculture America Conference. 4.
Palti, Y., Genet, C., Gao, G., Hu, Y., You, F., Boussaha, M., Rexroad III, C.E., Luo, M. 2012. A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of synteny with model fish genomes. Marine Biotechnology. 14:343-357.
Palti, Y., Genet, C., Luo, M., Charlet, A., Gao, G., Hu, Y., Castano-Sanchez, C., Yao, J., Vallejo, R.L., Rexroad III, C.E. 2011. A first generation integrated map of the rainbow trout genome. Biomed Central (BMC) Genomics. 12:180. DOI: 10.1186/1471-2164-12-180.
Wang, L., Ma, H., Rexroad III, C.E., Yao, J. 2011. Importin a8 (KPNA7) interacts with STL3, an oocyte-specific protein in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting. Paper No. 301-400.
Wag, L., Ma, H., Yao, J., Rexroad III, C.E. 2012. Importin alpha8 (KPNA7) interacts with STL3, an oocyte-specific protein in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting. 152.
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y., Weber, G.M. 2011. Detection of quantitative trait loci affecting response to crowding stress in rainbow trout. Gordon Research Conference Proceedings: Quantitative genetics & Genomics: From Genome to Phenotype. p. 151.
Wang, J., Salem, M., Kenney, P., Rexroad III, C.E., Yao, J. 2011. Molecular characterization of the MuRF genes in rainbow trout: potential role in muscle degradation. Comparative Biochemistry and Physiology. 158(3):208-215.
Miller, M.R., Palti, Y., Luo, M., Miller, J.A., Brunelli, J.P., Wheeler, P.A., Rexroad III, C.E., Thorgaard, G.H., Doe, C.Q. 2011. Rapid and accurate sequencing of the rainbow trout physical map using Illumina technology. Plant and Animal Genome Conference. W045.
Salem, M., Leeds, T.D., Rexroad III, C.E., Yao, J. 2011. Unlocking genetic secrets of the fast/slow growth in rainbow trout with next-generation sequencing. Plant and Animal Genome Conference. W041.
Qi, N., Salem, M., Kenney, B., Leeds, T.D., Rexroad IIII, C.E., Yao, J. 2011. Molecular characterization of the Akt-TOR signaling pathway in rainbow trout: potential role in muscle growth/degradation. Plant and Animal Genome Conference. W042.
Wiens, G.D., Leeds, T.D., Lapatra, S., Wilson, C., Cavendar, W., Evenhuis, J., Welch, T.J., Silverstein, J., Rexroad III, C.E. 2011. Preliminary field evaluation of rainbow trout selectively bred for increased resistance to bacterial cold water disease. Aquaculture America Conference. 308.
Salem, M., Rexroad III, C.E., Wang, J., Thorgaard, G.H., Yao, J. 2010. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Biomed Central (BMC) Genomics. 11:564.
Castano, C., Palti, Y., Rexroad III, C.E. 2011. SNP analysis with duplicated fish genomes: differentiation of SNPs, paralogous sequence variants and multi-site variants. In: Liu, Z.J., editor. Next Generation Sequencing and Whole Genome Selection in Aquaculture. 1st edition. Malden, MA: Wiley-Blackwell. p. 133-150.
Vallejo, R.L., Wiens, G.D., Rexroad III, C.E., Welch, T.J., Evenhuis, J., Leeds, T.D., Janss, L.L., Palti, Y. 2010. Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis. Journal of Animal Science. 88:3814-3832.
Salem, M., Kenney, P., Rexroad III, C.E., Yao, J. 2011. Towards molecular biomarkers for muscle atrophy and fillet quality in rainbow trout. Aquaculture America Conference. 34.
Rexroad III, C.E., Vallejo, R.L., Liu, S., Castano, C., Palti, Y., Weber, G.M. 2010. Genomic analysis of the stress response of rainbow trout to crowding [abstract]. Animal Genetics International Conference Proceedings. Paper No. 4023.
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y. 2010. Genetic management of broodstock populations with DNA markers in rainbow trout. World Congress of Genetics Applied in Livestock Production, Liepzig, Germany. CDROM.
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y. 2010. Genetic management of broodstock populations with DNA markers in rainbow trout. World Congress of Genetics Applied in Livestock Production, August 1 - 6, 2010, Liepzig, Germany. p 0928PP3-53.
Zhang, X., Rexroad Iii, C.E., Yao, J. 2010. ADP-ribosylation factor-like protein 4C (ARL4C) interacts with galectin-3 during oocyte development and embryogenesis in rainbow trout (Oncorhynchus mykiss) [abstract]. Society for the Study of Reproduction Annual Meeting. Paper No. 25.
Wang, L., Tripurani, S.K., Wanna, W., Rexroad III, C.E., Yao, J. 2010. Fbos, a novel oocyte-specific protein, interacts with proteins important for oocyte development in rainbow trout (Oncorhynchus mykiss) [abstract]. Society for the Study of Reproduction Annual Meeting. Paper No. 410.
Palti, Y., Rodriguez, M., Gahr, S.A., Purcell, M., Rexroad III, C.E., Wiens, G.D. 2010. Identification, characterization and genetic mapping of the TLR1 gene in rainbow trout (Oncorhynchus mykiss). Fish and Shellfish Immunology. 28:918-926.
Ma, H., Rexroad III, C.E., Yao, J. 2010. Molecular characterization and expression analysis of importin "a" family genes in rainbow trout. Plant and Animal Genome Conference.
Salem, M., Rexroad III, C.E., Wang, J., Thorgaard, G.H., Yao, J. 2010. Characterization of the rainbow trout transcriptome using Sanger and 454-Pyrosequencing approaches. Plant and Animal Genome Conference, No. 101.
Wang, J., Salem, M., Kenney, B.P., Weber, G.M., Rexroad III, C.E., Yao, J. 2010. Molecular characterization of the MuRF gene family: potential role in rainbow trout muscle degradation. Plant and Animal Genome Conference, No. 103.
Wiens, G.D., Vallejo, R.L., Leeds, T.D., Palti, Y., Evenhuis, J., Welch, T.J., Rexroad Iii, C.E. 2010. Inheritance of rainbow trout Oncorhynchus mykiss spleen size and correlation with bacterial cold water disease resistance. World Aquaculture Society Meeting 2010. Paper No. 87.
Rexroad Iii, C.E., Vallejo, R.L. 2009. Estimates of linkage disequilibrium and effective population size in rainbow trout. BioMed Central (BMC) Genetics. 10:83.
Vallejo, R.L., Wiens, G.D., Rexroad Iii, C.E., Welch, T.J., Evenhuis, J., Leeds, T.D., Janss, L.L., Palti, Y. 2010. Evidence of major genes affecting bacterial cold water disease resistance in rainbow trout using Bayesian methods of complex segregation analysis. Plant and Animal Genome Conference XVIII. Paper No. 103.
Palti, Y., Luo, M., Genet, C., Hu, Y., You, F., Vallejo, R.L., Rexroad Iii, C.E. 2010. A first generation integrated physical and genetic map of the rainbow trout genome. Plant and Animal Genome Conference XVIII. Paper No. 102.
Salem, M., Kenney, B.P., Rexroad Iii, C.E., Yao, J. 2010. Proteomic signature of muscle atrophy in rainbow trout. Journal of Proteomics. 73(4):778-789.
Sanchez Castano, C., Smith, T.P., Wiedmann, R.T., Vallejo, R.L., Salem, M., Yao, J., Rexroad Iii, C.E. 2009. Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library. Biomed Central (BMC) Genomics. 10:559.
Salem, M., Xiao, C., Womack, J., Rexroad Iii, C.E., Yao, J. 2010. A MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Marine Biotechnology. 12:410-429.
Palti, Y., Vallejo, R.L., Johnson, N.A., Rexroad Iii, C.E. 2010. Genetic assessment tools for evaluating broodstock population structure and pedigree reconstruction in rainbow trout. World Aquaculture Society Meeting. San Diego, CA.
Salem, M., Kenney, B., Rexroad Iii, C.E., Yao, J. 2009. INTEGRATIVE MICRO-RNA AND PROTEOMIC APPROACHES IDENTIFY MOLECULAR MARKERS PREDICTIVE OF MUSCLE ATROPHY IN RAINBOW TROUT [abstract]. American Fisheries Society Annual Meeting. Papaer No. 10
Zhang, X., Xiao, C., Salem, M., Rexroad Iii, C.E., Yao, J. 2009. Cloning of oocyte-expressed MicroRNAs in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
Wang, L., Tripurani, S., Wanna, W., Weber, G.M., Rexroad Iii, C.E., Yao, J. 2009. Cloning and characterization of a novel oocyte-specific gene encoding an F-Box protein in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
Vallejo, R.L., Rexroad III, C.E., Silverstein, J., Janss, L.G., Weber, G.M. 2009. Evidence of major genes affecting stress response in rainbow trout using Bayesian methods of complex segregation analysis. Journal of Animal Science. 87:3490-3505.
Leeds, T.D., Silverstein, J., Vallejo, R.L., Palti, Y., Rexroad III, C.E., Evenhuis, J., Hadidi, S., Weber, G.M., Welch, T.J., Wiens, G.D. 2009. Response to selection for bacterial cold water disease resistance in rainbow trout. International Symposium on Genetics in Aquaculture.
Wiens, G.D., Lapatra, S.E., Palti, Y., Vallejo, R.L., Leeds, T.D., Welch, T.J., Rexroad III, C.E. 2009. Variable regions in Flavobacterium psychrophilum strains identified by comparative genomics: application to selective breeding for cold water disease resistance. American Fishery Society (Fish Health Section) Proceedings.
Wanna, W., Rexroad III, C.E., Yao, J. 2010. Identification of a functional splice variant of 14-3-3E1 in rainbow trout. Marine Biotechnology. 12:70-80.
Kongchum, P., Rexroad Iii, C.E., Hallerman, E., David, L., Palti, Y. 2009. SNP identification, genetic mapping and tissue expression of the rainbow trout TLR9 gene. Animal Genetics. 40:1001.
Vallejo, R.L., Wiens, G.D., Welch, T.J., Rexroad Iii, C.E., Palti, Y. 2009. Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis. Gordon Research Conference Proceedings.
Renshaw, M., Carson, E., Hanna, A., Rexroad Iii, C.E., Krannemhoft, T., Gold, J. 2009. Microsatellite markers for species of genus Dionda (Cyprinidae) from the American southwest. Conservation Genetics. 10:1569-1575.
Rexroad Iii, C.E., Palti, Y., Gahr, S.A., Vallejo, R.L. 2008. A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BioMed Central (BMC) Genetics. 9:74.
Silverstein, J., Vallejo, R.L., Palti, Y., Welch, T.J., Wiens, G.D., Rexroad Iii, C.E., Ducrocq, V., Leeds, T.D. 2008. Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth. Journal of Animal Science. 87:860-867.
Rexroad Iii, C.E., Palti, Y., Vallejo, R.L. 2009. Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development. Meeting Abstract.
Salem, M., Xiao, C., Jonah, T., Rexroad III, C.E., Yao, J. 2009. MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Meeting Abstract.
Palti, Y., Luo, M., Hu, Y., Genet, C., Vallejo, R.L., Rexroad III, C.E. 0209. A first generation bac physical map of the rainbow trout genome. Plant and Animal Genome Conference. Paper No. 100.
Koop, B., Von Schalburg, K., Leong, J., Walker, N., Lieph, R., Cooper, G., Robb, A., Beetz-Sargent, M., Holt, R.A., Moore, R., Brahmbhatt, S., Rosner, J., Mcgowan, C., Rexroad Iii, C.E., Davidson, W. 2008. A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. Biomed Central (BMC) Genomics. 9:545.
Renshaw, M., Douglas, K., Rexroad Iii, C.E., Churney, A., Gold, J. 2009. Isolation and characterization of microsatellite markers in the Serra Spanish mackerel, Scomberomorus brasiliensis. Molecular Ecology Resources. 9:830-832.
Ramachandra, R., Salem, M., Gahr, S.A., Rexroad III, C.E., Yao, J. 2008. Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development. Biomed Central (BMC) Genomics. 8:41.
Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2008. Development of a 37K high-density oligo-nucleotide microarray for rainbow trout. Journal of Fish Biology. 72:(9)2187-2206.
Rexroad III, C.E., Vallejo, R.L. 2008. Characterization of Linkage Disequilibrium in a Rainbow Trout Broodstock Population. Plant and Animal Genome Conference.
Wanna, W., Rexroad III, C.E., Jianbo, Y. 2008. Genetic variations of 14-3-3E1 isoform in rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome Conference.
Karlsson, S., Renshaw, M., Rexroad III, C.E., Gold, J. 2008. Pcr primer pairs for 100 microsatellites in red drum (sciaenops ocellatus). Molecular Ecology Notes. 8:393-398.
Gahr, S.A., Vallejo, R.L., Weber, G.M., Shepherd, B.S., Silverstein, J., Rexroad III, C.E. 2008. Effects of short term growth hormone treatment on the rainbow trout (Oncorhynchus mykiss) liver and muscle transcriptomes. Physiological Genomics. 32:380-9.
Salem, M., Silverstein, J., Rexroad III, C.E., Jianbo, Y. Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss). Biomed Central (BMC) Genomics. 8:328.
Qiu, G., Rexroad III, C.E., Yao, J. 2007. Identification of a novel germ cell-specific mrna-like transcript (rtgst-1) predominantly expressed in early previtellgenic oocyte in rainbow trout (oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
Ramachandra, R., Gahr, S.A., Rexroad III, C.E., Yao, J. 2007. Involvement of micrornas in embryonic genome activation as shown by dicer expression in rainbow trout. Society for the Study of Reproduction Annual Meeting.
Qiu, G., Weber, G.M., Rexroad III, C.E., Yao, J. 2008. Identification of RtGST-1, a novel germ cell-specific mRNA-like transcript predominantly expressed in early previtellgenic oocytes in rainbow trout (Oncorhynchus mykiss). Molecular Reproduction and Development. 75:723-30.
Hoghadam, H., Ferguson, M.M., Rexroad III, C.E., Coulibaly, I., Danzmann, R.G. 2007. Genomic Organization of the igf1, igf2, myf5, myf6 and grf/pacap Genes across Salmoninae Genera. Animal Genetics. 38(5):527-532.
Wiens, G.D., Welch, T.J., Rexroad III, C.E., Lapatra, S., Call, D.R., Hunnicutt, D., Bhattacharyya, A., Campbell, J., Walunas, T. 2007. Genome Sequence of Flavobacterium psychrophilum Strain CSF 259-93 and Characterization of a Large Cluster of Genes Containing Short Repeats. Meeting Abstract Pg 12.
Gahr, S.A., Rise, M., Hunt, P., Koop, B., Rexroad III, C.E. 2007. Characterization of expressed sequence tags from the pituitary of rainbow trout (oncorhynchus mykiss). Animal Biotechnology. 18(3):213-230.
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout. Meeting Abstract.
Qiu, G., Ramachandra, R.K., Rexroad III, C.E., Yao, J. Molecular Characterization and Expression Profiles of Cyclin B1, B2 and Cdc2 Kinase during Oogenesis and Spermatogenesis in Rainbow Trout (Oncorhynchus mykiss). Animal Reproduction Sciences 105:209-225.
Johnson, N., Rexroad III, C.E., Eric, H., Vallejo, R.L., Palti, Y. 2007. Development and critical evaluation of a new multiplex system for parental allocation and broodstock management in rainbow trout. Aquaculture 266:53-62.
Nagler, J., Cavileer, T., Sullivan, J., Cyr, D., Rexroad III, C.E. 2007. The complete nuclear estrogen receptor family in the rainbow trout: discovery of the novel er.2 and both er. isoforms. Gene Vol 392(1-2)164-173.
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. Plant and Animal Genome Abstracts Pg. 11.
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. World Aquaculture Society Meeting.
Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Integration of molecular genetic information into the ncccwa selective breeding program for rainbow trout. Israeli Journal of Aquaculture 58(4) 323-7.
Nichols, K., Broman, K., Gahr, S.A., Rexroad III, C.E., Sundin, K., Young, J., Phillips, R., Wheeler, P., Thorgaard, G. 2006. The genetic architecture of development rate in rainbow trout: QTL, QTL x maternal environment, and candidate gene expression. [abstract]. 4th Ecological Genomics Symposium.
Phillips, R., Nichols, K., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Gahr, S.A., Danzmann, R., Drew, R., Thorgaard, G. 2006. Assignment of rainbow trout linkage groups to specific chromosomes. Genetics 174(3):1661-1670.
Coulibaly, I., Danzmann, R., Palti, Y., Vallejo, R.L., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Mapping of genes in a region associated with upper temperature tolerance in rainbow trout. Animal Genetics 37(6):598-599.
Coulibaly, I., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Embryonic expression of uncoupling protein 2 genes in rainbow trout. Fish Physiology and Biochemistry Journal. 32:249-253.
Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2006. Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (oncorhynchus mykiss). Biomed Central (BMC) Genomics 7:203.
Ramachandra, R.K., Lankford, S.E., Weber, G.M., Rexroad III, C.E., Yao, J. 2006. Identification of OORP-T, a novel oocyte-specific gene encoding a protein with a conserved oxysterol binding protein domain in rainbow trout. Molecular Reproduction and Development 74(4) 502-11.
Silverstein, J., Weber, G.M., Rexroad III, C.E., Vallejo, R.L. 2006. Genetics and genomics - integration of molecular genetics into a breeding program for rainbow trout. Israeli Journal of Aquaculture 2006. 58:231.
Palti, Y., Rexroad Iii, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Selective breeding and genetic mapping of disease resistance in rainbow trout. Meeting Abstract. Presented at The 9th International Symposium of The International Association for Genetics in Aquaculture, June 26-30, 2006 at Montpellier, France. Meeting Book of Abstracts p. 81.
Gahr, S.A., Weber, G.M., Rexroad III, C.E. 2006. Fasting and refeeding effects the expression of the inhibitor of dna binding (id)genes in rainbow trout (Oncorhynchus mykiss) muscle. Comparative Biochemistry and Physiology. 144:472-477.
Wiens, G.D., Lapatra, S., Palti, Y., Rexroad III, C.E., Yao, J., Welch, T.J. 2006. Gene expression and cellular immune response of rainbow trout (Oncorhynchus mykiss) exposed to Yersinia ruckeri: A model system for understanding mechanisms of teleost protective immunity. 10th International Congress, International Society of Developmental and Comparative Immunology, July 1 - 6, 2006. Meeting Abstract. Page 249.
Davidson, W., Chevalet, C., Rexroad III, C.E., Omholt, S. 2006. Salmonid genomic sequencing initiative: the case for sequencing the genomics of atlantic salmon (salmo salar) and rainbow trout (oncorynchus mykiss). Government Publication/Report. p. 1-22.
Mohamed, S., Keeney, B., Rexroad III, C.E., Yao, J. 2006. Molecular characterization of fish muscle atrophy and proteolysis associated with spawning. Comparative Biochemistry and Physiology 1(2):227-237.
Salem, M., Levesque, A., Moon, T., Rexroad III, C.E., Yao, J. 2006. Anabolic effects of feeding beta-2 adrenergic agonists on rainbow trout muscle proteases and myofibrillar proteins. Comparative Biochemistry and Physiology. 1 44(2) 145-154.
Silverstein, J., Weber, G.M., Rexroad Iii, C.E., Vallejo, R.L. 2006. Genetics and genomics-intregration of breeding and molecular genetics programs. Meeting Abstract. Presented at BARD sponsored workshop on Aquaculture Genetics in Eilat, Israel, Feb 20-23, 2006.
Gharbi, K., Coulibaly, I., Rexroad III, C.E., Moghadam, H., Leder, E.H., Ng, S., Davidson, W., Guyomard, R., Ferguson, M., Danzmann, R. 2006. Comparative maps of salmonid genomes: an update. Meeting Abstract. Montpellier, France 6/25 - 30, 2006.
Gharbi, K., Coulibaly, I., Rexroad III, C.E., Moghadam, H., Leder, E.H., Ng, S., Davidson, W., Ferguson, M., Danzmann, R. 2006. Progress toward a gene map for rainbow trout (oncorhynchus mykiss). Meeting Abstract International Symposium for Genetics in Aquaculture 6/25-30, 2006 Montpellier, France.
Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Genomics and genetics:molecular variation, bioinformatics and functional genomics, implementation into the ncccwa breeding program. BARD Workshop: Aquaculture Genetics-Status and Prospects, Eilat, Israel. Meeting Abstract.
Rexroad III, C.E., Vallejo, R.L., Coulibaly, I., Couch, C., Garber, A., Westerman, M., Sullivan, C. 2006. Identification and characterization of microsatellites for striped bass from repeat-enriched libraries. Conservation Genetics 7(6) 971-982.
Rexroad III, C.E., Coulibaly, I., Couch, C., Garber, A., Westerman, M., Sullivan, C. 2005. Microsatellite markers for population genetics and genome mapping in striped bass. Plant and Animal Genome Conference. Abstract ID P638, page 261.
Rexroad III, C.E., Danzmann, R., Palti, Y., Vallejo, R.L. 2005. The national center for cool and cold water aquaculture genetic map for rainbow trout. Plant and Animal Genome Conference. Abstract ID P639, page 261.
Palti, Y., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J. 2005. Characterization of major histocompatibility (MH) haplotypes and their association with desease resistance in rainbow trout. Plant and Animal Genome Conference. Abstract ID P643, page 262.
Nichols, K., Gahr, S.A., Rexroad III, C.E., Phillips, R., Thorgaard, G. 2005. Mapping, expression, and molecualr variation of potential candidate genes underlying a major embryonic development rate qtl in rainbow trout. Plant and Animal Genome Conference. Abstract ID W205, page 54.
Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2005. Genomic structure and expression patterns of uncoupling protein 2 genes in rainbow trout. Plant and Animal Genome Conference. Abstract ID W188, page 50.
Gahr, S.A., Weber, G.M., Shepherd, B.S., Silverstein, J., Vallejo, R.L., Coulibaly, I., Rexroad III, C.E. 2005. Effects of Recombinant Bovine Somatotropin (rbst) on the Liver and Muscle Transcriptomes of High Growth Rate Rainbow Trout (Oncorhynchus Mykiss). Plant and Animal Genome Conference, Jan 2006. Abstract ID P534, pg 260.
Couch, C., Garber, A., Rexroad III, C.E., Abrams, J., Stannard, J., Westerman, M., Sullivan, C. 2006. Isolation and characterization of 149 novel microsatellite dna markers for striped bass, morone saxatilis, and cross-species amplification in white bass, m. chrysops, and their hybrid. Molecular Ecology Notes. 6(3):667-669.
Higgins, A., Silverstein, J., Engles, J., Wilson, M., Rexroad III, C.E., Blemmings, K. 2006. Starvation induced alterations in hepatic lysine metabolism in different families of rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry Journal. 31(1):33-44.
Johnson, N., Palti, Y., Rexroad III, C.E., Silverstein, J., Vallejo, R.L. 2006. Critical evaluation of a new multiplex system used for parental allocation and broodstock management in rainbow trout (oncorhynchus mykiss) selection programs. World Aquaculture Society Meeting.
Nagler, J., Cavileer, T., Cyr, D., Rexroad III, C.E. 2005. Estrogen receptor alpha-2: a novel isoform from the rainbow trout. Society for the Study of Reproduction Annual Meeting. 38:M184.
Palti, Y., Rodriguez, M.F., Gahr, S.A., Rexroad Iii, C.E., Hansen, J.D. 2005. Genomic sequence and annotation of a region that harbors major histocompatibility genes in rainbow trout. Meeting Abstract. The 3rd International Symposium of Genetics of Animal Health, July 13-15, 2005 held in Ames, Iowa, USA, Meeting Book of Abstracts p. 124.
Salem, S., Rexroad Iii, C.E., Yao, J. 2006. Identification of a novel gill specific calpain from the rainbow trout (oncorhynchus mykiss). Fish Physiology and Biochemistry Journal. 32:1-6.
Mohamed, S., Yao, J., Rexroad III, C.E., Kenney, B., Semmens, K., Killefer, J., Nath, J. 2005. Characterization of the calpastatin gene in fish: its potential role in muscle growth and fillet quality. Comparative Biochemistry and Physiology 141: 488-97.
Couch, C., Garber, A., Abrams, J., Rexroad III, C.E., Westerman, M., Sullivan, C. 2005. Microsatellite development for a hybrid striped bass (morone chrysops x m. saxatilis) selective breeding program. Meeting Abstract. International Marine Biotechnology Conference, June 7 - 12, 2005, St. Johns, New Foundland, Canada.
Krasnov, A., Koskinen, H., Rexroad III, C.E., Afanasyev, S., Molsa, H., Oikari, A. 2005. Transcriptome responses to carbon tetrachloride and pyrene in the kidney and liver of juvenile rainbow trout (oncorhynchus mykiss). Aquatic Toxicology 74: 70-81.
Danzmann, R., Cairney, M., Ferguson, M., Gharbi, K., Guyomard, R., Holm, L., Hoyheim, B., Leder, E.H., Okamoto, N., Ozaki, A., Rexroad III, C.E., Sakomoto, T., Taggart, J., Woram, R. 2005. A comparative analysis of the rainbow trout genome with two other species of fish (arctic charr and atlantic salmon) within the tetraploid derivative salomidae family (subfamily: salmoninae). Genome 2005 Dec;48(6):1037-51.
Rexroad III, C.E., Rodriguez, M.F., Gharbi, K., Danzmann, R., Dekoning, J., Phillips, R., Palti, Y. 2005. Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (oncorhynchus mykiss). Genomics. BMC Genomics 6:54.
Gahr, S.A., Rodriguez, M.F., Rexroad III, C.E. 2005. Identification and expression profile of the id gene family in rainbow trout (oncorhynchus mykiss). Biochimica et Biophysica Acta 1729:64-73.
Rexroad III, C.E., Gahr, S.A., Palti, Y. 2005. Identifying candidate genes for rainbow trout (Oncorhynchus mykiss) aquaculture research. Aquaculture America Conference page 362, January 17-20, New Orleans, LA.
Rexroad III, C.E., Rodriguez, M.F., Danzmann, R., Palti, Y. 2005. Development of comparative maps using microsatellites developed from rainbow tourt est. Plant and Animal Genome XIII P604, page 221.
Gahr, S.A., Rexroad III, C.E. 2005. Gene expression of the inhibitor of DNA binding (ID) proteins during embryonic development in the rainbow trout (oncorhynchus mykiss). Aquaculture America Conference January 17-20, page 140 New Orleans, LA.
Salem, M., Yao, J., Rexroad III, C.E., Kenney, B., Semmens, K., Killefer, J., Nath, J. 2005. Molecular characterization of calpastatins from rainbow trout: their role in muscle growth and fillet texture development. Aquaculture America Conference 2005 page 388.
Palti, Y., Fincham, M.R., Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Hansen, 2005. J. Genomic sequencing of a rainbow trout major histocompatibility region that harbors class ii and class iii genes. Plant and Animal Genome XIII Abstracts P606, pg 222.
Phillips, R., Noakes, M., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Palti, Y., Danzmann, R., Nichols, K., Drew, R., Thorgaard, G. 2005. Assignment of rainbow trout linkage groups to specific chromosomes. Plant and Animal Genome XIII Abstracts W034, page 13.
Coulibaly, I., Gharbi, K., Danzmann, R., Yao, J., Rexroad III, C.E. 2005. Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags. Animal Genetics 36, 309-315.
Coulibaly, I., Yao, J., Rexroad III, C.E. 2005. Comparisons of microsatellites derived from repeat-enriched libraries and est in rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome XIII P602 pg 221.
Gahr, S.A., Rexroad III, C.E. 2005. Tissue distribution and embryonic expression of the inhibitor of differentiation/DNA binding (ID) family of proteins in the rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome, XIII P603, pg 221.
Krasnov, A., Koskinen, H., Petri, P., Rexroad Iii, C.E., Afanasyev, S., Molsa, H. 2005. Gene expression in the brain and kidney of rainbow trout in response to handling stress. Biomed Central (BMC) Genomics 6:3.
Silverstein, J., Parsons, J., Rexroad III, C.E., Palti, Y. 2005. Heterosis and genetic distance in strain crosses of rainbow trout. Aquaculture America Conference 2005. New Orleans, LA 1/17 - 1/20/2005.
Pruett, C., Saillant, E., Renshaw, M., Patton, J., Rexroad Iii, C.E., Gold, J., Microsatellite dna markers for population-genetic studies and parentage assignment cobia, rachyentron canadum. Molecular Ecology Notes 5: 84-86.
Salem, M., Nath, J., Rexroad III, C.E., Killefer, J., Yao, J. 2005. Identification and molecular characterization of the rainbow trout calpains (capn1 and capn2)their expression in muscle wasting during starvation. Comparative Biochemistry and Physiology 140:63-71.
Pereyra, R., Saillant, E., Pruett, C., Rexroad III, C.E., Rocha-Olivares, A., Gold, J. 2004. Characterization of polymorphic microsatellites in the pacific sardine sardinops sagax sagax (clupeidae). Molecular Ecology Notes 4(4):739-41.
Gahr, S.A., Rexroad III, C.E., Palti, Y. 2004. Genomic characterization of a novel pair of id genes in the rainbow trout (oncorhynchus mykiss). Animal Genetics. 35(4):317-320.
Koskinen, H., Pehkonen, P., Vehniainen, E., Krasnov, A., Rexroad III, C.E., Afanasyev, S., Molsa, H., Oikari, A. 2004. Response of rainbow trout transcriptome to model chemical contaminants. Biochemical and Biophysical Research Communications. 320(3):745-753.
Koskinen, H., Krasnov, A., Rexroad III, C.E., Gorodilov, Y., Afanasyev, S., Molsa, H. 2004. The 14-3-3 proteins in the teleost fish rainbow trout (oncorhynchus mykiss). Journal Experimental Biology 207(19):3361-8.
Gahr, S.A., Rexroad III, C.E. 2004. Genomic characterization and expression of the id protein genes in the rainbow trout (oncorhynchus mykiss). Experimental Biology. April 17-21, 2004. Abstract 233.2.
Wiens, G.D., Gahr, S.A., Morrison, C., Palti, Y., Rexroad III, C.E., Rodriguez, M.F., Welch, T.J. 2004. Genomic characterization and expression analysis of a tumor necrosis factor superfamily 13b (tnfsf 13b) homologue from rainbow trout (oncorhynchus mykiss). International Immunology Congress p. 82C (abstract W15.15).
Stewart, A., Dailey, R., Rexroad Iii, C.E. 2004. Identification and use of polymorphic markers in rainbow trout. World Aquaculture Society Meeting. March 1 - 5, 2004 Honolulu, Hawaii.
Coulibaly, I., Rexroad III, C.E. 2004. Identification of anonymous microsatellite markers for mapping in rainbow trout. Plant and Animal Genome Abstracts. Abstract P718. p.250.
Gahr, S.A., Palti, Y., Rexroad III, C.E. 2004. Identification and characterization of two inhibitor of differentiation (id) genes in rainbow trout (oncorhynchus mykiss). Plant and Animal Genome Abstracts. p.252.
Palti, Y., Gahr, S.A., Hansen, J., Rexroad III, C.E. 2004. Physical mapping of loci of interest in rainbow trout: evidence for genome-wide duplication. Plant and Animal Genome Abstracts. p.251.
Stewart, A., Soonhag, K., Killefer, J., Rexroad III, C.E. 2004. Expressed sequence tags in rainbow trout intestine, liver, and kidney (oncorhynchus mykiss). Plant and Animal Genome Abstracts. Abstract P53. p.85.
Rexroad III, C.E., Palti, Y., Thorgaard, G., Hansen, J., Silverstein, J., Weber, G.M., Wiens, G.D., Gahr, S.A., Rodriguez, M.F., Coulibaly, I., Overturf, K. 2004. A proposal advocating draft sequencing the genome of rainbow trout, oncorhynchus mykiss. Government Publication/Report.. Dept of Energy Joint Genome Institute Community Sequencing Program.
Rexroad III, C.E., Gahr, S.A., Palti, Y., Karamycheva, S., Keele, J.W., Quackenbush, J. 2003. Sequence analysis of a rainbow trout cdna library and creation of a gene index. Cytogenetics and Genome Research. 102(1-4):347-354.
Rodriguez, M.F., Rexroad III, C.E., Palti, Y. 2003. Characterization of twenty four microsatellite markers for rainbow trout (oncorhynchus mykiss). Molecular Ecology Notes. 3(4):619-622.
Rexroad III, C.E. 2003. Development of genetic markers for striped bass (morone saxitilis) and rainbow trout (oncorhynchus mykiss). Genetics in Aquaculture Symp. VII. Nov 9-15, 2003. p.8.
Waldbieser, G.C., Karsi, A., Gahr, S.A., Rexroad III, C.E. 2003. Rapid development of gene-tagged microsatellite markers from bac clones of channel catfish, ictalurus punctatus, and rainbow trout, oncorhynchus mykiss. Genetics in Aquaculture Symp. VII. Nov 9-15, 2003. p.22.
Rexroad III, C.E., Keele, J.W. 2003. Development of microarrays for transcriptome research in rainbow trout. VI Inter Congress of Comparative Physiology & Biochemistry. Feb 2-7, 2003. Vol 134. Supl 1. Abstract 8.2. p.S29.
Palti, Y., Rexroad Iii, C.E., Gahr, S.A. 2003. Utilization and characterization of the ncccwa rainbow trout bac library for physical and linkage mapping. Plant and Animal Genome XI. p.241.
Rexroad III, C.E., Keele, J.W., Hostuttler, M.A., Palti, Y. 2003. Identification and mapping of microsatellites in rainbow trout est sequences. Plant and Animal Genome XI Book of Abstracts. p.242.
Silverstein, J., Rexroad III, C.E., King, T. 2004. Genetic variation measured by microsatellites among three strains of domesticated rainbow trout. Aquaculture Research. 35:40-48.
Silverstein, J., Rexroad III, C.E. 2003. Characterization of genetic variation in three strains of rainbow trout used to initiate a selective breeding program for aquaculture production efficiency. Plant and Animal Genome 2003 Annual Meeting Book of Abstracts.
Rexroad III, C.E., Palti, Y., Thorgaard, G.H. 2002. Review: status and opportunities for genomic research with rainbow trout. Comparative Biochemistry and Physiology. 133(4):609-646.
Overturf, K.E., Rexroad Iii, C.E., Palti, Y., Thorgaard, Buhler, Bailey, Williams, Kaattari, Hansen, Hardy 2002. Status and opportunities for genomics research with rainbow trout. Comparative Biochemistry and Physiology. Bol 133, Issue 4 p. 609-646.
Mitra, A., Foster-Frey, J. A., Wells,K. D., Rexroad,C. E. III, Wells,K. D. and Wall,R. J. (2003) Molecular Characterization lysozyme type II gene in rainbow trout (Oncorhynchus mykiss): Evidence of Gene Duplication. Animal Biotechnology 14:7-12.
Rexroad III, C.E., Silverstein, J. 2002. Combining genetics and genomics for enhancing cool and coldwater aquaculture production. Proceedings of the International Conference on Recirculating Aquaculture. July 17-21, 2002. Book of Abstracts. p. 133-142
Rexroad III, C.E. 2001. Isolation of rainbow trout microsatellite markers from enriched libraries. International Plant and Animal Genome IX Conference. Jan 13-17, 2001. Abstract P613. p.214.
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