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Research Project: APPLICATION OF RICE GENOMICS TO DEVELOP SUSTAINABLE CROPPING SYSTEMS FOR THE GULF COAST Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Registration of a rice gene-mapping population consisting of 'TeQing'-into-'Lemont' backcross introgression lines - (Germplasm Registration)
Pinson, S.R., Liu, G., Jia, M.H., Jia, Y., Fjellstrom, R.G., Sharma, A., Wang, Y., Tabien, R.E., Li, Z. 2012. Registration of a rice gene-mapping population consisting of 'TeQing'-into-'Lemont' backcross introgression lines. Journal of Plant Registrations. 6:128-135.
Evaluation of antioxidant, lipid, and protein fractions of accessions of Oryza Species. - (Peer Reviewed Journal)
Bergman, C.J., Goffman, F.D., Chen, M.-H. 2011. Evaluation of antioxidant, lipid, and protein fractions of accessions of Oryza Species. Cereal Chemistry. 88:283-290.
Bacterial panicle blight resistance QTL in rice (Oryza sativa L.) and their association with resistance to other diseases - (Peer Reviewed Journal)
Pinson, S.R., Shahjahan, A., Rush, M.C., Groth, D.E. 2010. Bacterial panicle blight resistance QTL in rice (Oryza sativa L.) and their association with resistance to other diseases. Crop Science. 50:1287-1297.
Early generation selection for resistance to rice kernel fissuring proves effective - (Abstract Only)
Pinson, S.R., Gibbons, J.W., Jia, Y. 2008. Early generation selection for resistance to rice kernel fissuring proves effective. [abstract] American Society of Agronomy Abstracts. p. 552-8.
Spreading culm locus discovered while dissecting a sheath blight resistance QTL within a set of TeQing-into-Lemont introgression lines - (Abstract Only)
Wang, Y., Pinson, S.R., Fjellstrom, R.G., Sharma, A., Tabien, R.E. 2008. Spreading culm locus discovered while dissecting a sheath blight resistance QTL within a set of TeQing-into-Lemont introgression lines. American Society of Agronomy Abstracts paper number 552.8, Houston, TX Oct. 5-9, 2008. CDROM.
Selection of brown rice (whole-grain) varieties with long shelf Life - (Experiment Station)
Chen, M. 2008. Selection of brown rice (whole-grain) varieties with long shelf life. Texas Rice, Highlighting Research 2008. http://beaumont.tamu.edu/eLibrary/Newsletter/2007_Highlights_in_Research.pdf. pp. VII-IX.
Antioxidant and antimicrobial effect of colored rice bran extract in low NaCl, phosphate-free patties from catfish belly flap meat - (Experiment Station)
Min, B., Chen, M., Green, B.W. 2008. Antioxidant and antimicrobial effect of colored rice bran extract in low NaCl, phosphate-free patties from catfish belly flap meat. Texas Rice, Highlighting Research in 2008. http://beaumont.tamu.edu/eLibrary/Newsletter/2008_Highlights_in_Research.pdf. 2008. p. IX.
Genetic mapping of sheath blight resistance to QTLs within tropical Japonica rice cultivars - (Peer Reviewed Journal)
Sharma, A., Mcclung, A.M., Pinson, S.R., Kepiro, J.L., Shank, A.R., Tabien, R.E., Fjellstrom, R.G. 2009. Genetic mapping of sheath blight resistance to QTLs within tropical Japonica rice cultivars. Crop Science 49:256-264.
Registration of TIL:455, TIL:514, and TIL:642, three rice germplasm lines containing introgressed sheath blight resistance alleles - (Peer Reviewed Journal)
Pinson, S.R., Oard, J.H., Groth, D., Miller, R., Jia, M.H., Jia, Y., Fjellstrom, R.G., Mackill, D., Li, Z. 2008. Registration of TIL:455, TIL:514, and TIL:642, three rice germplasm lines containing introgressed sheath blight resistance alleles. Journal of Plant Registrations. 2(3):251-254.
Waxy gene haplotypes: Associations with pasting properties in an international rice germplasm collection - (Peer Reviewed Journal)
Chen, M., Bergman, C.J., Pinson, S.R., Fjellstrom, R.G. 2008. Waxy gene haplotypes: Associations with pasting properties in an international rice germplasm collection. Journal of Cereal Science. 48:781-788.
Use of gross income as a measure of productivity in rice breeding - (Peer Reviewed Journal)
Samonte, S.B., Wilson, L.T., Tabien, R.E., McClung, A.M. 2008. Use of gross income as a measure of productivity in rice breeding. Canadian Journal of Plant Science 88:1015-1022.
Exploring the use of Oryza species to enhance the lipid fraction of cultivated rice - (Proceedings)
Bergman, C.J., Goffman, F.D., Chen, M. 2008. Exploring the use of Oryza species to enhance the lipid fraction of cultivated rice. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Analysis of genotypic diversity in lipid hydrolytic stability of rice bran during storage - (Proceedings)
Chen, M., Yan, W. 2008. Analysis of genotypic diversity in lipid hydrolytic stability of rice bran during storage. Rice Technical Working Groups, San Diego, CA, Feb. 2008.
Using a set of TeQing-into-Lemont chromosome segment substitution lines for fine mapping QTL: Case studies on sheath blight resistance, spreading culm, and mesocotyl elongation - (Proceedings)
Pinson, S.R., Wang, Y., Liu, G., Jia, M.H., Jia, Y., Sharma, A., Fjellstrom, R.G., Tabien, R.E. 2008. Using a set of TeQing-into-Lemont chromosome segment substitution lines for fine mapping QTL: Case studies on sheath blight resistance, spreading culm, and mesocotyl elongation. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Factors contributing to milling quality differences in MY3, a 'RiceCAP' project milling population - (Abstract Only)
Jodari, F., Roughton, A.I., Fjellstrom, R.G., Scheffler, B.E., Nelson, J.C. 2008. Factors contributing to milling quality differences in MY3, a 'RiceCAP' project milling population [abstract]. In: Proceedings of the Thirty-Second Rice Technical Working Group, February 18–21, 2008, San Diego, California. p. 55.
Using TeQing-into-Lemont introgression lines (TILs) to dissect sheath blight resistance QTLs and fine-map a spreading culm gene - (Proceedings)
Wang, Y., Pinson, S.R., Fjellstrom, R.G., Sharma, A., Brooks, S.A., Tabien, R.E. 2008. Using TeQing-into-Lemont introgression lines (TILs) to dissect sheath blight resistance QTLs and fine-map a spreading culm gene. Rice Technical Working Group Meeting Proceedings, San DIego, CA, Feb. 18-21, 2008. CDROM.
Mapping QTL for milling yield and grain characteristics in a tropical japonica long grain cross - (Peer Reviewed Journal)
Kepiro, J.L., McClung, A.M., Chen, M., Yeater, K.M., Fjellstrom, R.G. 2008. Mapping QTL for milling yield and grain characteristics in a tropical japonica long grain cross. Journal of Cereal Science 48:477-485.
Is ALL Rice Bran Created Equal?     Reprint Icon - (Proceedings)
Bergman, C.J., Chen, M., Goffman, F.D., Pinson, S.R. 2007. Is ALL Rice Bran Created Equal?. Rice Utilization Workshop Proceedings, New Orleans, LA Feb. 1-2-2007. http://www.usarice.com/doclib/124/3838.pdf.
Rice grain vitamin-E homologs and g-Oryzanol: effects of grain development and cultural practices - (Proceedings)
Chen, M., Bergman, C.J. 2007. Rice grain vitamin-E homologs and g-Oryzanol: effects of grain development and cultural practices. Rice Utilization Workshop Proceedings.
Analysis of an SFP marker in the Rice fgr/BAD2 gene and fragrance in US rice germplasm - (Abstract Only)
Fjellstrom, R.G., Mcclung, A.M., Chen, M.H., Bockelman, H.E., Yan, W. 2007. Analysis of an SFP marker in the Rice fgr/BAD2 gene and fragrance in US rice germplasm. [abstract] American Society of Agronomy Abstracts. p. 259-3.
Resistance to rice grain fissuring: Improving breeding selection techniques and identifying physical, chemical, and genetic factors underlying fissure resistance - (Proceedings)
Pinson, S.R., Osborn, G.S., Thomas, A.E., Mcclung, A.M. 2007. Resistance to rice grain fissuring: Improving breeding selection techniques and identifying physical, chemical, and genetic factors underlying fissure resistance. United States Japan Natural Resources Protein Panel 36:227-231.
Breeding Jasmine-Type Aromatic Rice for Southern United States - (Abstract Only)
Sha, X., Linscombe, S.D., Chen, M.H. 2007. Breeding Jasmine-Type Aromatic Rice for Southern United States. American Society of Agronomy Abstracts p. 259-1.
A new rice gene-mapping population containing indica chromosomal segments introgressed into a tropical japonica background - (Abstract Only)
Pinson, S.R., Liu, G., Jia, Y., Jia, M.H., Fjellstrom, R.G., Sharma, A. 2007. A new rice gene-mapping populatin containing indica chromosomal segments introgressed into a tropical japonica background. [abstract] American Society of Agronomy Abstracts. p.277-6.
Using association genetics to study rice end-use quality - (Abstract Only)
Bergman, C.J., Fjellstrom, R.G., Chen, M.H. 2007. Using association genetics to study rice end-use quality. [abstract] American Association of Cereal Chemists, October 7-10, 2007, San Antonio, TX. Paper 52:A16.
A new micro-chamber method for selecting sheath blight tolerant rice - (Experiment Station)
Pinson, S.R., Fjellstrom, R.G., Tabien, R.E., Mcclung, A.M., Wang, Y. 2007. A new micro-chamber method for selecting sheath blight tolerant rice. Experiment Station Bulletins. http://beaumont.tamu.edu/eLibrary/Newsletter/2007_Highlights_in_Research.pdf. pp.IX-XI.
Rice Waxy gene: Associations with apparent amylose content and pasting properties - (Experiment Station)
Chen, M.H., Bergman, C.J., Fjellstrom, R.G. 2007. Rice Waxy gene: Associations with apparent amylose content and pasting properties. Experiment Station Bulletins. http://beaumont.tamu.edu/eLibrary/Newsletter/2007_Highlights_in_Research.pdf. p. XV.
Rice bran phytonutrients - (Experiment Station)
Chen, M.H., Bergman, C.J., Pinson, S.R. 2007. Rice bran phytonutrients. Experiment Station Bulletins.
Rice Waxy gene SNPs: Associations with amylose content and structure and pasting properties - (Abstract Only)
Chen, M.H., Bergman, C.J., Fjellstrom, R.G. 2007. Rice Waxy gene SNPs: Associations with amylose content and structure and pasting properties [abstract]. American Association of Cereal Chemists Meetings. Paper No. 52:A16.
Waxy gene haplotypes: Associations with amylose content and the effect by the environment in an international rice germplasm collection - (Peer Reviewed Journal)
Chen, M., Bergman, C.J., Pinson, S.R., Fjellstrom, R.G. 2008. Waxy gene haplotypes: Associations with amylose content and the effect by the environment in an international rice germplasm collection. Journal of Cereal Science. 47:536-545.
AFLP markers linked with long grain milling yield - (Other)
Kepiro, J.L., Fjellstrom, R.G., Mcclung, A.M. 2007. Aflp markers linked with long grain milling yield. RiceCAP News: http://www.uark.edu/ua/ricecap/Communication/newsletters/RiceCAPv3n7_Apr07.pdf. pp. 4-6.
Adding Value to Rice Through Research - (Proceedings)
Mcclung, A.M., Bergman, C.J., Chen, M., Yan, W., Fjellstrom, R.G. 2006. Adding Value to Rice Through Research. Meeting Proceedings. Available: http://www.cnpaf.embrapa.br/cbc-arroz/2006/pdf/dia27_1pm.pdf.
RiceCAP: Identification of QTL Associated with Rice Milling Yield in a Long Grain Cross - (Proceedings)
Fjellstrom, R.G., Linscombe, S.D., Oard, J.H., Moldenhauer, K.K., Boza, E., Jodari, F., Nelson, J., Yeater, K.M., Mcclung, A.M. 2007. RiceCAP: Identification of QTL Associated with Rice Milling Yield in a Long Grain Cross. Plant and Animal Genome XV, January 13-17, 2007, San Diego, CA. Available: http://intl-pag.org/15/abstracts.
Modeling of Milling Yield Components and Their Relationship to Grain Quality QTLs in Long Grain japonica Rice - (Proceedings)
Kepiro, J.L., Fjellstrom, R.G., Mcclung, A.M., Yeater, K.M. 2007. Modeling of Milling Yield Components and Their Relationship to Grain Quality QTLs in Long Grain japonica Rice. Plant and Animal Genome XV, January 13-17, 2007, San Diego, CA. Available: http://intl-pag.org/15/abstracts.
New Breeding Parents Containing Novel QTL for Rice Sheath Blight Resistance Identified by Combining Phenotypic and Molecular Characterizations - (Proceedings)
Pinson, S.R., Oard, J.H., Groth, D., Miller, R., Liu, G., Jia, Y., Jia, M.H., Fjellstrom, R.G. 2007. New Breeding Parents Containing Novel QTL for Rice Sheath Blight Resistance Identified by Combining Phenotypic and Molecular Characterizations. [abstract]. Plant and Animal Genome Conference XV, January 13-17, 2007, San Diego, CA. Available: http://intl-pag.org/15/abstracts.
PROTEOMIC AND GENETIC APPROACHES TO IDENTIFYING DEFENSE-RELATED PROTEINS IN RICE CHALLENGED WITH THE FUNGAL PATHOGEN RHIZOCTONIA SOLANI - (Peer Reviewed Journal)
Lee, J., Bricker, T.R., Lefevre, M., Pinson, S.R., Oard, J.H. 2006. Proteomic and genetic approaches to identifying defense-related proteins in rice challenged with the fungal pathogen Rhizoctonia solani. Molecular Plant Pathology 7(5):405-416.
SHEATH BLIGHT RESISTANCE IN SOUTHERN RICE - (Experiment Station)
Kepiro, J.L., Fjellstrom, R.G., McClung, A.M. 2006. Sheath blight resistance in Southern rice. Texas Rice. Highlighting Research in 2006. p. VIII.
STUDYING THE INHERITANCE OF HIGH MILLING YIELD IN CYPRESS - (Experiment Station)
Kepiro, J.L., Fjellstrom, R.G., McClung, A.M. 2006. Studying the inheritance of high milling yield in Cypress. Texas Rice, Highlighting Research in 2006. pp.VII-IX..
Rice functionality, starch structure and the genes - (Experiment Station)
Chen, M.H., Fjellstrom, R.G., Pinson, S.R., McClung, A.M., Bergman, C.J. 2006. Rice functionality, starch structure and the genes. http://beaumont.tamu.edu/eLibrary/Newsletter/2006_Highlights_in_Research.pdf.Texas Rice, Highlighting Research in 2006. p. XII.
Whole grain rice and health benefits - (Experiment Station)
Bergman, C.J., Chen, M.H., Goffman, F.D. 2006. Whole grain rice and health benefits. Texas Rice, Highlighting Research in 2006. http://beaumont.tamu.edu/eLibrary/Newsletter/2007_Highlights_in_Research.pdf. pp. XII-XIII.
INCORPORATING FOREIGN SHEATH BLIGHT RESISTANCE GENES INTO US RICE GEMPLASM - (Experiment Station)
Pinson, S.R., Fjellstrom, R.G., Shank, A.R., Oard, J., Groth, D., Jia, Y., Jia, M.H. 2006. Incorporating foreign sheath blight resistance genes into us rice gemplasm. Texas Rice, Highlighting Research 2006. pp.VI-VII.
CREATION OF A GENOTYPIC AND PHENOTYPIC DATABASE FOR THE NSGC RICE COLLECTION - (Proceedings)
McClung, A.M., Yan, W., Lee, F.N., Marchetti, M.A., Bockelman, H.E., Fjellstrom, R.G. 2006. Creation of a genotypic and phenotypic database for the NSGC rice collection. HortScience. 41(4):936.
A method to determine the content, molecular weights, and weight-and molar-based distributions of degree of polymerization of amylose and fine-structure of amylopectin - (Peer Reviewed Journal)
Chen, M.H., Bergman, C.J. 2007. A method to determine the content, molecular weights, and weight- and molar-based distributions of degree of polymerization of amylose and fine-structure of amylopectin. Carbohydrate Polymers 69:562-578.
Genotype and environment effects on the tocotrienol, tocopherol, and gamma oryzanol fractions of an international rice germplasm collection - (Proceedings)
Bergman, C.J., Pinson, S.R., Chen, M.H. 2006. Genotype and environment effects on the tocotrienol, tocopherol, and gamma-oryzanol fractions of an international rice germplasm collection. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. pp. 117-118. 2006.
A method for the molecular characterization of rice starch using an aqueous HPSEC-MALLS-RI system - (Proceedings)
Chen, M.H., Bergman, C.J. 2006. A method for the molecular characterization of rice starch using an aqueous HPSEC-MALLS-RI system. In: 31st Proceedings of the Rice Technical Working Group Meeting Proceedings. 2006 CDROM.
Genotypic and phenotypic assessment of the NSGC rice core collection for amylose content and alkali spreading value - (Proceedings)
Fjellstrom, R.G., Yan, W., Chen, M.H., Bryant, R.J., Bockelman, H.E., McClung, A.M. 2006. Genotypic and phenotypic assessment of the NSGC rice core collection for amylose content and alkali spreading value. In: Proceedings of the 30th Rice Technical Working Group Meeting. 2006 CDROM.
MOLECULAR MARKERS FOR MILLING YIELD IN SOUTHERN U.S. LONG GRAIN RICE - (Proceedings)
Kepiro, J.L., Fjellstrom, R.G., McClung, A.M. 2006. Molecular markers for milling yield in Southern U.S. long grain rice. Rice Technical Working Group Meeting, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
GENOTYPIC AND PHENOTYPIC ASSESSMENT OF THE NSGC CORE COLLECTION OF RICE FOR RESISTANCT TO PYRICULARIA GRISEA - (Proceedings)
McClung, A.M., Yan, W., Jia, Y., Lee, F.N., Marchetti, M.A., Fjellstrom, R.G. 2006. Genotypic and phenotypic assessment of the NSGC Core Collection of rice for resistance to Pyricularia grisea. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006. Houston, Texas. 2006 CDROM.
BRINGING QUANTITATIVE TRAITS UNDER BREEDER CONTROL BY COMBINING QTL MAPPING WITH CANDIDATE GENE APPROACHES: A CASE STUDY OF RICE SHEATH BLIGHT RESISTANCE - (Proceedings)
Pinson, S.R., Jia, Y., Fjellstrom, R.G., Jia, M.H., Hulbert, S., Liu, K., Nelson, J.C. 2006. Bringing quantitative traits under breeder control by combining QTL mapping with candidate gene approaches: A case study of rice sheath blight resistance. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
SELECTION FOR STABLE HIGH INCOME GROSSING RICE GENOTYPES - (Proceedings)
Samonte, S.O., Wilson, L.T., McClung, A.M., Tabien, R.E. 2006. Selection for stable high income grossing rice genotypes. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
COMPLEMENTARY PROTEOMIC AND GENETIC ANALYSES OF RICE RESPONSE TO CHALLENGE BY THE FUNGAL PATHOGEN RHIZOCTONIA SOLANI - (Proceedings)
Lee, J., Bricker, T.M., Lebevre, M., Pinson, S.R., Cooper, B., Oard, J.H. 2006. Complementary proteomic and genetic analyses of rice response to challenge by the fungal pathogen Rhizoctonia solani [abstract]. Plant and Animal Genome Conference Proceedings. p. P253.
EVALUATING MILLING YIELD IN A CYPRESS X PANDA CROSS WITH TRADITIONAL, RE-MILLING AND RE-WETTING TECHNIQUES - (Proceedings)
Kepiro, J.L., Fjellstrom, R.G., McClung, A.M. 2006. Evaluating milling yield in a Cypress x Panda cross with traditional, re-milling and re-wetting techniques. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
SELECTION FOR STABLE HIGH INCOME GROSSING RICE GENOTYPES - (Proceedings)
Samonte, S.O., Wilson, L.T., McClung, A.M., Tabien, R.E. 2006. Selection for stable high income grossing rice genotypes. Rice Technical Working Group Meeting Proceedings, February 29 - March 1, 2006, Houston, TX. 2006. CDROM.
MAPPING SHEATH BLIGHT RESISTANCE QTL(S) IN TROPICAL JAPONICA RICE - (Proceedings)
Sharma, A., Kepiro, J.L., Fjellstrom, R.G., Pinson, S.R., Shank, A.R., McClung, A.M., Tabien, R.E. 2006. Mapping sheath blight resistance QTL(s) in tropical japonica rice. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
COMPLEMENTARY PROTEOMIC AND GENETIC ANALYSES OF RICE RESPONSE TO RICE CHALLENGE BY THE FUNGAL PATHOGEN RHIZOCTONIA SOLANI - (Proceedings)
Lee, J., Bricker, T.M., Lefevre, M., Pinson, S.R., Cooper, B., Oard, J.H. 2006. Complementary proteomic and genetic analyses of rice response to rice challenge by the fungal pathogen Rhizoctonia solani. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
QTLS FOR MILLING YIELD IN TROPICAL JAPONICA LONG GRAIN RICE - (Proceedings)
Kepiro, J.L., Fjellstrom, R.G., McClung, A.M. 2006. QTLs for milling yield in tropical Japonica long grain rice [abstract]. Plant and Animal Genome Conference Proceedings. p. 162.
MAPPING SHEATH BLIGHT RESISTANCE QTLS IN RICE - (Proceedings)
Sharma, Arun, Kepiro, J.L., Fjellstrom, R.G., Pinson, S.R., Shank, A.R., McClung, A.M., Tabien, R. 2006. Mapping sheath blight resistance QTLs in rice [abstract]. Plant and Animal Genome Conference Proceedings. p. 162.
Modified Ecotilling protocol for simple and rapid SNP discovery and genotyping in rice - (Proceedings)
Kadaru, S.B., Yadav, A.S., Fjellstrom, R.G., Oard, J.H. 2006. Modified Ecotilling protocol for simple and rapid SNP discovery and genotyping in rice [abstract]. Plant and Animal Genome Conference Proceedings. p. P255.
SSR MARKERS CLOSELY LINKED TO THE PI-Z LOCUS ARE USEFUL FOR SELECTION OF BLAST RESISTANCE IN A BROAD ARRAY OF RICE GERMPLASM - (Peer Reviewed Journal)
Fjellstrom, R.G., McClung, A.M., Shank, A.R. 2006. SSR markers closely linked to the Pi-z locus are useful for selection of blast resistance in a broad array of rice germplasm. Molecular Breeding. 17(2):149-157.
Part II. Breeding selected crops, Breeding rice - (Book / Chapter)
Mcclung, A.M. 2007. Part II. Breeding selected crops, Breeding rice. In: Acquaah, G. editor. Principles of Plant Genetics and Breeding. Malden, MA: Blackwell Publishing. p. 498-508.
CORRELATION BETWEEN QTLS CONFERRING RESISTANCE TO FOUR DIFFERENT DISEASES WITH EACH OTHER AND WITH RGAS IDENTIFIES KEY REGIONS FOR FUTURE RESEARCH - (Proceedings)
Pinson, S.R., Hulbert, S., Liu, K., Nelson, J.C. 2005. Correlation between QTLs conferring resistance to four different diseases with each other and with RGAs identifies key regions for future research [abstract]. 5th International Rice Genetics Symposium, Manila, Philippines. p. 95.
EFFECT OF GROWTH LOCATION IN THE UNITED STATES ON AMYLOSE CONTENT, AMYLOPECTIN FINE STRUCTURE, AND THERMAL PROPERTIES OF STARCHES OF LONG GRAIN RICE CULTIVARS - (Peer Reviewed Journal)
Aboubacar, A., Moldenhauer, K.A., McClung, A.M., Beighley, D.H., Hamaker, Bruce R. 2006. Effect of growth location in the United States on amylose content, amylopectin fine structure, and thermal properties of starches of long grain rice cultivars. Cereal Chemistry. 83(1):93-98.
MOLECULAR MARKERS IN RICE BREEDING - (Experiment Station)
Fjellstrom, R.G. 2005. Molecular markers in rice breeding. Texas Rice, Highlighting Research in 2005. p. X
Genetic markers reveal novel genes which control rice cooking quality - (Experiment Station)
McClung, A.M., Chen, M., Bockelman, H.E., Bryant, R.J., Yan, W., Fjellstrom, R.G. 2005. Genetic markers reveal novel genes which control rice cooking quality. Texas Rice, Highlighting Research in 2005. http://beaumont.tamu.edu/eLibrary/Newsletter/2005_Highlights_in_Research.pdf. pp. X-XI.
A new tool for selection of cooked rice texture - (Experiment Station)
Chen, M., McClung, A.M., Fjellstrom, R.G. 2005. A new tool for selection of cooked rice texture. Texas Rice, Highlighting Research in 2005. http://beaumont.tamu.edu/eLibrary/Newsletter/200/_Highlights_in_Research.pdf. p. XIV.
DIGGING FOR GOLD - (Experiment Station)
McClung, A.M., Fjellstrom, R.G. 2005. Digging for gold. Texas Rice, Highlighting Research in 2005. p. IX.
PRESIDIO RICE - A NEW LONG GRAIN RICE WITH IMPROVED RATOON CROP POTENTIAL AND MILLING YIELD - (Experiment Station)
McClung, A.M. 2005. Presidio rice - a new long grain rice with improved ratoon crop potential and milling yield. Texas Rice, Highlighting Research in 2005. p. XI.
Determining rice cooking, processing, and sensory quality through the use of genetic markers - (Abstract Only)
McClung, A.M., Chen, M., Bergman, C.J., Fjellstrom, R.G. 2005. Determining rice cooking, processing, and sensory quality through the use of genetic markers [abstract]. American Association of Cereal Chemists Meeting. p. S-33.
PUTTING SHEATH BLIGHT RESISTANCE GENES TO WORK IN THE RICE FIELD - (Experiment Station)
Pinson, S.R. 2005. Putting sheath blight resistance genes to work in the rice field. Texas Rice, Highlighting Research in 2005. pp. VIII-IX.
NEW RELEASE OF 'SABINE' RICE FOR THE PROCESSING INDUSTRY - (Experiment Station)
McClung, A.M., 2005. New release of 'Sabine' rice for the processing industry. Rice Production Update. p. 1.
RICE IDENTITY TESTING USING DNA MARKER ANALYSIS OF PROCESSEDOR ARCHIVED RICE TISSUE AND RICE-INGREDIENT FOODS - (Proceedings)
Fjellstrom, R.G., McClung, A.M. 2006. Rice identity testing using DNA marker analysis of processed or archived rice tissue and rice-ingredient foods. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
SELECTION UNDER DOMESTICATION: EVIDENCE FOR A SWEEP IN THE RICE 'WAXY' GENOMIC REGION - (Proceedings)
Olsen, Kenneth M., Caicedo, Ana L., Polato, Nick, McClung, A.M., McCouch, S., Purugganan, M.D. 2005. Selection under domestication: Evidence for a sweep in the rice 'waxy' genomic region. Genetics. 17(2):965-974.
QTL MAPPING OF MILLING YIELD IN SOUTHERN U.S. RICE WITH AMPLIFIED FRAGMENT LENGTH POLYMORPHISM (AFLP) AND MICRO-SATELLITE (SSR) MARKERS - (Proceedings)
Kepiro, J.L., Fjellstrom, R.G., McClung, A.M. 2005. QTL mapping of milling yield in southern U.S. rice with amplified fragment length polymorphism (AFLP) and micro-satellite (SSR) markers. Plant and Animal Genome Conference Proceedings. p. 146.
MICROSATELLITE MARKERS CLOSELY LINKED TO THE PI-Z BLAST RESISTANCE GENE IN RICE - (Proceedings)
Fjellstrom, R.G., McClung, A.M., Shank, A.R. 2005. Microsatellite markers closely linked to the Pi-z blast resistance gene in rice. Plant and Animal Genome Conference. p. 144.
NITROGEN UTILIZATION EFFICIENCY: RELATIONSHIPS WITH GRAIN YIELD, GRAIN PROTEIN AND YIELD-RELATED TRAITS IN RICE - (Peer Reviewed Journal)
Samonte, S.B., Wilson, L.T., Medley, J., Pinson, S.R., McClung, A.M., Lales, J. 2006. Nitrogen utilization efficiency: relationships with grain yield, grain protein and yield-related traits in rice. Agronomy Journal 98:168-176.
Nitrogen utilization efficiency: Relationships with grain yield, grain protein, and yield-related traits in rice - (Peer Reviewed Journal)
Samonte, S.O., Wilson, L.T., Pinson, S.R., McClung, A.M., Lales, J.S. 2006. Nitrogen utilization efficiency: Relationships with grain yield, grain protein, and yield-related traits in rice. Agronomy Journal. 98:168-176.
EFFICIENT ANALYSIS OF MARKERS, GENES, AND QTLS USING A PERMANENT RICE GENE-MAPPING POPULATION - (Proceedings)
Pinson, S.R., Li, Z., Tabien, R.E., Tai, T.H., Redus, M., Fjellstrom, R.G. 2004. Efficient analysis of markers, genes,and QTLs using a permanent rice gene-mapping population. Plant and Animal Genome Conference XIII. p. 141
MARKER ASSISTED BREEDING FOR IMPROVING DISEASE RESISTANCE IN U.S. RICE CULTIVARS - (Proceedings)
McClung, A.M., Shank, A.R., Marchetti, M.A., Bormans, C., Jodari, F., Johnson, C.W., Park, W.D., Fjellstrom, R.G. 2004. Marker assisted breeding for improving disease resistance in U.S. rice cultivars. Texas Plant Protection Conference. p. 27.
MOLECULAR GENETIC ANALYSIS OF MILLING YIELD IN RICE USING AMPLIFIED FRAGMENT LENGTH POLYMORPHISM (AFLP) AND MICROSATELLITE (SSR) MARKERS FOR QTL MAPPING - (Proceedings)
Kepiro, J.L., McClung, A.M., Fjellstrom, R.G. 2004. Molecular genetic analysis of milling yield in rice using amplified fragment length polymorphism (aflp) and microsatellite (SSR) markers for QTL mapping. United States Japan Natural Resources Protein Panel. pp. 278-282.
Characterization of a core collection of rice germplasm and elite breeding lines in the US with genetic markers associated with cooking quality - (Proceedings)
McClung, A.M., Chen, M., Bockelman, H.E., Bryant, R.J., Yan, W., Fjellstrom, R.G. 2004. Characterization of a core collection of rice germplasm and elite breeding lines in the US with genetic markers associated with cooking quality. Proceedings, 2nd International Rice Functional Genomics Conference, Tucson, Arizona. p. 127.
THE LEMONT/TEQING RIL RICE POPULATION PROVIDES UNIQUE OPPORTUNITY FOR CORRELATING MOLECULAR DATA WITH PHENOMICS - (Proceedings)
Pinson, S.R., Li, Z., Tabien, R.E., Tai, T., Redus, M.A., Fjellstrom, R.G. 2005. The Lemont/Teqing RIL rice population provides unique opportunity for correlating molecular data with phenomics. Proceedings, 2nd International Symposium, Rice Functional Genomics, Tucson, Arizona. p. 150.
Genetic mapping of microsatellite (SSR) markers linked to the rice Pi-i blast resistance gene - (Proceedings)
Fjellstrom, R.G., Shank, R.A., McClung, A.M., Jodari, F. 2004. Genetic mapping of microsatellite (SSR) markers linked to the rice Pi-i blast resistance gene [abstract]. 2nd International Symposium of Rice Functional Genomics. p. 98.
The influence of kernel maturity, milling degree and milling quality on rice bran phytochemical concentrations - (Peer Reviewed Journal)
Chen, M., Bergman, C.J. 2005. The influence of kernel maturity, milling degree and milling quality on rice bran phytochemical concentrations. Cereal Chemistry 82(1):4-8.
DEVELOPING RICE VARIETIES WITH IMPROVED FISSURE RESISTANCE: STEP 1. IDENTIFYING EFFECTIVE BREEDER SELECTION TECHNIQUES. - (Experiment Station)
Pinson, S.R., 2004. Developing rice varieties with improved fissure resistance: Step 1. identifying effective breeder selection techniques. Texas Rice. p. 7-8.
QTL MAPPING OF GRAIN QUALITY TRAITS FROM THE INTERSPECIFIC CROSS ORYZA SATIVA X O. GLABERRIMA - (Peer Reviewed Journal)
Aluko, G., Martinez, C., Tohme, J., Castano, C., Bergman, C.J., Oard, J.H. 2004. QTL mapping of grain quality traits from the interspecific cross Oryza sativa X O. glaberrima. Journal of Theoretical and Applied Genetics. 109:630-639.
A GAS CHROMATOGRAPHIC PROCEDURE FOR DETERMINING RICE DEGREE OF MILLING - (Proceedings)
Bergman, C.J., Goffman, F.D. 2004. A gas chromatographic procedure for determining rice degree of milling. In: Rice Technical Working Group Meeting Proceedings. February 29-March 4, 2004, New Orleans, LA. 2004 CD-ROM.
PROGRESS IN DEVELOPING DNA MARKERS FOR MILLING YIELD - (Proceedings)
Kepiro, J.L., McClung, A.M., Fjellstrom, R.G. 2004. Progress in developing dna markers for milling yield. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. 2004 CDROM.
IMPROVED METHODS FOR IDENTIFYING FISSURE RESISTANT RICE - (Proceedings)
Pinson, S.R., Osborn, G.S. 2004. Improved methods for identifying fissure resistant rice. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. 2004 CDROM.
The application of new markers for predicting blast resistance and cooking quality in rice - (Proceedings)
McClung, A.M., Shank, A.R., Kanter, D., Jodari, F., Beighley, D., Chen, M., Fjellstrom, R.G. 2004. The application of new markers for predicting blast resistance and cooking quality in rice. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. p. 59-60. 2004.
DEVELOPMENT OF IMPROVED METHODS FOR SHEATH BLIGHT EVALUATION - (Proceedings)
Shank, A.R., McClung, A.M., Fjellstrom, R.G. 2004. Development of improved methods for sheath blight evaluation. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. 2004 CDROM.
DEVELOPMENT OF GENETIC MARKERS FOR SEMI-DWARF PLANT HEIGHT AND PHOTOPERIOD INSENSITIVITY FOR MARKER AIDED SELECTION IN U.S. RICE - (Proceedings)
Fjellstrom, R.G., McClung, A.M., Gibbons, J., Deren, C. 2004. Development of genetic markers for semi-dwarf plant height and photoperiod insensitivity for marker aided selection in u.s. rice. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. 2004 CDROM.
GENETIC DIVERSITY AMONG WEST AFRICAN RICE VARIETIES FOR GRAIN QUALITY TRAITS USING CHEMICAL AND DNA MARKER ANALYSES - (Proceedings)
Traore, K., Fjellstrom, R.G., McClung, A.M. 2004. Genetic diversity among West African rice varities for grain quality traits using chemical and DNA marker analyses. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. 2004 CDROM.
ARE AGRONOMIC TRAITS IMPACTED BY THE PRESENCE OF PI- GENES WHEN BLAST DISEASE IS ABSENT? - (Proceedings)
McClung, A.M., Shank, A.R., Bormans, C., Park, W.D., Fjellstrom, R.G. 2004. Are agronomic traits impacted by the presence of Pi- genes when blast disease is absent? In: Rice Technical Working Group Meeting Proceedings, February 29-Mach 4, 2004, New Orleans, LA. 2004 CDROM
Single nucleotide polymorphism markers at the rice Alk locus controlling alkali spreading value - (Proceedings)
Fjellstrom, R.G., Chen, M., Bergman, C.J., McClung, A.M. 2004. Single nucleotide polymorphism markers at the rice Alk locus controlling alkali spreading value. In: Proceedings of the 30th Rice Technical Working Group Meeting. 2004 CDROM.
Genetic variation at the waxy locus associated with starch pasting properties in international rice germplasm - (Proceedings)
Chen, M., Bergman, C.J., Fjellstrom, R.G. 2004. Genetic variation at the waxy locus associated with starch pasting properties in international rice germplasm. In: Proceedings of the 30th Rice Technical Working Group Meeting. 2004 CDROM.
Waxy locus genetic variation associated with amylose content in international rice germplasm - (Proceedings)
Chen, M., Bergman, C.J., Fjellstrom, R.G. 2004. Waxy locus genetic variation associated with amylose content in international rice germplasm. In: 30th Proceedings of the Rice Technical Working Group Meeting. CDROM.
QTLS FOR PANICLE BLIGHT RESISTANCE AND THEIR ASSOCIATION WITH RESISTANCE TO OTHER DISEASES - (Proceedings)
Pinson, S.R., Shahjahan, A.M., Rush, M.C. 2004. QTLs for panicle blight resistance and their association with resistance to other diseases. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. 2004 CDROM.
Progressing from putative QTLs to marker assisted selection in breeding - (Abstract Only)
McClung, A.M., Pinson, S.R., Shank, A.R., Chen, M., Bergman, C.J., Fjellstrom, R.G. 2003. Progressing from putative QTLs to marker assisted selection in breeding [abstract]. Agronomy Abstracts. 2003 CDROM.
THE RICE PLANT: GROWTH, DEVELOPMENT AND GENETIC IMPROVEMENT - (Book / Chapter)
McClung, A.M. 2004. The rice plant: growth, development and genetic improvement. In: Champagne, E.T., editor. Rice: Chemistry and Technology. 3rd Edition. American Association of Cereal Chemists, Inc., St. Paul, MN. p. 25-48.
REGISTRATION OF SABER RICE - (Peer Reviewed Journal)
McClung, A.M., Fjellstrom, R.G., Bergman, C.J., Bormans, C.A., Park, W.D., Marchetti, M.A. 2004. Registration of Saber rice. Crop Science. 44:693-694.
MAPPING AND GENETIC CHARACTERIZATION OF A NOVEL BLAST RESISTANCE GENE ARISING FROM THE RICE CULTIVAR LEAH - (Proceedings)
Fjellstrom, R.G., Shank, A.R., McClung, A.M. 2003. Mapping and genetic characterization of a novel blast resistance gene arising from the rice cultivar Leah. Plant and Animal Genome Conference Proceedings. P. 170.
Genetic Variation at the waxy locus associated with starch pasting properties in international rice germplasm - (Proceedings)
Chen, M., Bergman, C.J., Fjellstrom, R.G. 2003. Genetic variation at the waxy locus associated with starch pasting properties in international rice germplasm. In: Proceedings of the Plant and Animal Genome Conference Proceedings. p. 168.
Mapping of rice thermal properties and its relationship to the Alk and Waxy genes - (Proceedings)
McClung, A.M., Chen, M., Bergman, C.J., Fjellstrom, R.G. 2003. Mapping of rice thermal properties and its relationship to the alk and waxy genes. In: Proceedings of the Plant and Animal Genome Conference. p. 168.
   

 
Project Team
McClung, Anna
McClung, Anna
Chen, Ming-Hsuan
Pinson, Shannon
 
Project Annual Reports
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Publications
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Related National Programs
  Plant Genetic Resources, Genomics and Genetic Improvement (301)
  Global Change (204)
 
 
Last Modified: 06/19/2013
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